I got 84 mods active
I updated all my mods with The Mod Manager but I still have trouble to play (come back to windope).
So I have to chose between "normal" game in 3.01 or "modded" game without update ...ok so 3.01 --> bin
There was one messing with .pak files which I uninstalled before all the mods started working for me I suggest getting rid of it.
Some of the mods (as Xazardrous for example) actualy need 3.1 update version to work. Others should be just one more extracted to change their modification date so it was newer than 3.1 patch.